ExamplesΒΆ
The notebooks for the examples and the workflow to prepare the necessary datasets are available in the example repository.
Benchmarking runtime and memory of annotation methods
Co-occurrence computations
In-silico mixed Mouse Colon scRNA-seq data
Mapping single cells into space
Object splitting for in-silico mixed scRNA-seq data and Slide-Seq data
Single molecule data: osmFISH mouse somato-sensory cortex
TACCO overview
Parameter Variations for annotation using Optimal Transport
Simulated single cell expression data with ambient contamination
Simulated single cell expression data with dropout
Single-cell differentiation
Slide-Seq Mouse Colon
Slide-Seq Mouse Olfactory Bulb - multiple pucks
Slide-Seq Mouse Olfactory Bulb - single puck
Visium Mouse Kidney