tacco.utils.umap_single_cell_data

umap_single_cell_data(adata, inplace=False, verbose=1, **kwargs)

Preprocess single cell data in a standardized way from bare counts as input and include the generation of a umap embedding.

Parameters:

• adata – The AnnData to process

• inplace – Whether the input AnnData instance should be changed to contain the processed data

• verbose – Level of verbosity, with 0 (no output), 1 (some output), …

• kwargs – Extra keyword arguments are forwarded to preprocess_single_cell_data()

Returns:

The processed AnnData