tacco.utils.scale_counts

scale_counts(adata, rescaling_factors, counts_location=None, round=False)

Scales the count matrix in an AnnData in various locations inplace.

Parameters:

• adata – The AnnData with the counts to scale

• rescaling_factors – The gene-wise rescaling factors

• counts_location – A string or tuple specifying where the count matrix is stored, e.g. ‘X’, (‘raw’,’X’), (‘raw’,’obsm’,’my_counts_key’), (‘layer’,’my_counts_key’), … For details see counts().

• round – Whether to round the result to integer values

Returns:

None. This is an inplace operation.