tacco.plots

Visualization functions

Functions

annotated_heatmap	Plots a heatmap of cells and genes grouped by categorical annotations.
annotation_coordinate	Plots an annotation density with respect to a scalar coordinate.
cellsize	Scatter plots of average cell sizes in an annotation category in the whole dataset against some reference dataset.
co_occurrence	Plot co-occurrence as determined by co_occurrence().
co_occurrence_matrix	Plot co-occurrence as determined by co_occurrence() or co_occurrence_matrix() as a matrix.
comparison	Scatterplots of the annotation fractions of different annotations, e.g. of different annotation methods or of methods and a ground truth.
compositions	Plot compositions of groups.
contribution	Plot contribution to groups.
dotplot	Dot plot of expression values.
frequency	Scatter plots of the total frequency of annotation in the whole dataset against some reference dataset.
frequency_bar	Bar plots of the total frequency of annotation in the whole dataset against some reference dataset.
get_default_colors	Chooses default colors.
heatmap	Plot heatmap of contribution to groups.
mix_base_colors	Mix colors "additively".
scatter	Scatter plots of annotation.
sigmap	Plot heatmap of contribution to groups and mark significant differences with asterisks.
significances	Plot enrichment significances.
subplots	Creates a new figure with a grid of subplots.