tacco.get.positions

positions(adata, position_key)

Get an DataFrame with the positions of the observations.

Parameters:
  • adata – An AnnData with positions annotation in .obs or .obsm. Can also be a DataFrame, which is then treated like the .obs of an AnnData.

  • position_key – The .obsm key or array-like of .obs keys with the position space coordinates. Also supports data paths as specified in get_data_from_key().

Returns:

A DataFrame with the positions of the observations.