TACCO 0.3.0 (2024-01-10)¶

Features¶

tacco.plots.subplots(): support for changing the dpi and forwarding kwargs to matplotlib.pyplot.subplots()
tacco.plots.dotplot(): new swap_axes argument
tacco.utils.split_spatial_samples(): more flexible and intuitive reimplementation for spatial splitting samples which can account explicitly for spatial correlations; deprecates the tacco.utils.spatial_split() function
tacco.tools.setup_orthology_converter(), tacco.tools.run_orthology_converter(): orthology conversion between species
tacco.get.get_data_from_key(): general getter to retrieve data from an anndata given a data path
tacco.get.get_positions(): support for data paths

tacco.tools.annotate(): reconstruction_key now honors max_annotation. So tacco.tools.split_observations() works with reconstruction_key as well. This fixes issue #9 .
tacco.tools.split_observations(): fixed map_obsm_keys parameter
tacco.plots.significances(): fix using pre-supplied ax, fix not significant annotated but significance colored cells, fix future warning, work for data with enrichment and without depletion
tacco.plots.dotplot(): catch edge case with gene-group combinations without a match in “marks”
tacco.plots.co_occurrence(): fixed bug for multiple anndatas in the input
tacco.plots.co_occurrence_matrix(): fixed bug for restrict_intervals=None
tacco.tools.annotate(): multi_center=1 changed so it now behaves the same as multi_center=0/None, fix FutureWarning from kmeans
tacco.tools.get_contributions(): fix FutureWarning from groupby
tacco.plots.co_occurrence(), tacco.plots.co_occurrence_matrix(): coocurrence plots now follow the show_only and show_only_center order